Hierarchy For All Packages

Package Hierarchies:

• uk.ac.ebi.arrayexpress2.magetab.converter,
• uk.ac.ebi.arrayexpress2.magetab.datamodel,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.graph,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.utils,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.layout,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.calc,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node,
• uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute,
• uk.ac.ebi.arrayexpress2.magetab.exception,
• uk.ac.ebi.arrayexpress2.magetab.handler,
• uk.ac.ebi.arrayexpress2.magetab.handler.adf,
• uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl,
• uk.ac.ebi.arrayexpress2.magetab.handler.adf.node,
• uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute,
• uk.ac.ebi.arrayexpress2.magetab.handler.idf,
• uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl,
• uk.ac.ebi.arrayexpress2.magetab.handler.listener,
• uk.ac.ebi.arrayexpress2.magetab.handler.sdrf,
• uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node,
• uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute,
• uk.ac.ebi.arrayexpress2.magetab.handler.visitor,
• uk.ac.ebi.arrayexpress2.magetab.listener,
• uk.ac.ebi.arrayexpress2.magetab.parser,
• uk.ac.ebi.arrayexpress2.magetab.renderer,
• uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor,
• uk.ac.ebi.arrayexpress2.magetab.utils,
• uk.ac.ebi.arrayexpress2.magetab.utils.tab,
• uk.ac.ebi.arrayexpress2.magetab.validator

Class Hierarchy

• java.lang.Object
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.AbstractADFAttribute (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ADFAttribute)
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ControlTypeAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ReporterGroupAttribute
  • uk.ac.ebi.arrayexpress2.magetab.converter.AbstractConverter<S,T> (implements uk.ac.ebi.arrayexpress2.magetab.converter.Converter<S,T>)
    • uk.ac.ebi.arrayexpress2.magetab.converter.IDFConverter<O>
    • uk.ac.ebi.arrayexpress2.magetab.converter.MAGETABConverter<O>
    • uk.ac.ebi.arrayexpress2.magetab.converter.SDRFConverter<O>
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractGraph<S> (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Graph<S>)
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF
  • uk.ac.ebi.arrayexpress2.magetab.handler.AbstractHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.Handler)
    • uk.ac.ebi.arrayexpress2.magetab.handler.adf.ADFConversionHandler<O> (implements uk.ac.ebi.arrayexpress2.magetab.handler.ConversionHandler<D,O>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.adf.ADFGraphReadHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ReadHandler<H,D,T>)
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.CompositeElementHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.FeatureHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.ReporterHandler
    • uk.ac.ebi.arrayexpress2.magetab.handler.adf.ADFHeaderReadHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ReadHandler<H,D,T>)
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.AccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.ArrayDesignNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.CommentHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.PrintingProtocolHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.ProviderHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SequencePolymerTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SequencePolymerTypeTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SequencePolymerTypeTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SubstrateTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SubstrateTypeTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SubstrateTypeTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SurfaceTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SurfaceTypeTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.SurfaceTypeTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.TechnologyTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.TechnologyTypeTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.TechnologyTypeTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.TermSourceFileHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.TermSourceNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.TermSourceVersionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl.VersionHandler
    • uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.ADFNodeConversionHandler<D,O> (implements uk.ac.ebi.arrayexpress2.magetab.handler.ConversionHandler<D,O>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.adf.ADFValidateHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ValidateHandler<D>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.idf.IDFConversionHandler<O> (implements uk.ac.ebi.arrayexpress2.magetab.handler.ConversionHandler<D,O>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.idf.IDFReadHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ReadHandler<H,D,T>)
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.AccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.CommentHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.DateOfExperimentHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalDesignHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalDesignTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalDesignTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalFactorNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalFactorTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalFactorTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentalFactorTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ExperimentDescriptionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.InvestigationTitleHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.MAGETABVersionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.NormalizationTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.NormalizationTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.NormalizationTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonAddressHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonAffiliationHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonEmailHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonFaxHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonFirstNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonLastNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonMidInitialsHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonPhoneHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonRolesHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonRolesTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PersonRolesTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolContactHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolDescriptionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolHardwareHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolParametersHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolSoftwareHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ProtocolTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicationAuthorListHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicationDoiHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicationStatusHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicationStatusTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicationStatusTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicationTitleHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PublicReleaseDateHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.PubMedIdHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.QualityControlTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.QualityControlTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.QualityControlTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ReplicateTermAccessionHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ReplicateTermSourceRefHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.ReplicateTypeHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.SDRFFileHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.TermSourceFileHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.TermSourceNameHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl.TermSourceVersionHandler
    • uk.ac.ebi.arrayexpress2.magetab.handler.idf.IDFValidateHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ValidateHandler<D>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.MAGETABValidateHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ValidateHandler<D>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFConversionHandler<O> (implements uk.ac.ebi.arrayexpress2.magetab.handler.ConversionHandler<D,O>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.SDRFNodeConversionHandler<D,O> (implements uk.ac.ebi.arrayexpress2.magetab.handler.ConversionHandler<D,O>)
    • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFReadHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ReadHandler<H,D,T>)
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ArrayDataHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ArrayDataMatrixHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.AssayHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.DerivedArrayDataHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.DerivedArrayDataMatrixHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ExtractHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.HybridizationHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ImageHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.LabeledExtractHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.NormalizationHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.SampleHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ScanHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFReadInContextHandler
        • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.FactorValueNodeHandler
        • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.ProtocolHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.SourceHandler
      • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.UnknownHeaderHandler
    • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFValidateHandler (implements uk.ac.ebi.arrayexpress2.magetab.handler.ValidateHandler<D>)
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node)
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.AbstractADFNode (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.ADFNode)
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.CompositeElementNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.FeatureNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.ReporterNode
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.SDRFNode)
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ArrayDataMatrixNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ArrayDataNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ArrayDesignNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.DerivedArrayDataMatrixNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.DerivedArrayDataNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ExtractNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.HybridizationNode
        • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AssayNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ImageNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.LabeledExtractNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.NormalizationNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ProtocolApplicationNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.SampleNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ScanNode
      • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.SourceNode
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.UnresolvedPlaceholderNode
  • org.isatools.tablib.export.graph2tab.AbstractNodeFactory<N,B>
    • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.WrapperNodeFactory
  • uk.ac.ebi.arrayexpress2.magetab.parser.AbstractParser<T> (implements uk.ac.ebi.arrayexpress2.magetab.parser.Parser<T>)
    • uk.ac.ebi.arrayexpress2.magetab.parser.ADFParser
    • uk.ac.ebi.arrayexpress2.magetab.parser.IDFParser
    • uk.ac.ebi.arrayexpress2.magetab.parser.MAGETABArrayParser<O>
    • uk.ac.ebi.arrayexpress2.magetab.parser.MAGETABParser<O>
    • uk.ac.ebi.arrayexpress2.magetab.parser.SDRFParser
  • uk.ac.ebi.arrayexpress2.magetab.parser.AbstractParser.DefaultHandlerListener (implements uk.ac.ebi.arrayexpress2.magetab.handler.listener.HandlerListener)
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.AbstractSDRFAttribute (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.SDRFAttribute)
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.ArrayDesignAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.CharacteristicsAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.FactorValueAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.LabelAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.MaterialTypeAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.ParameterValueAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.PerformerAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.ProviderAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.TechnologyTypeAttribute
    • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.UnitAttribute
  • uk.ac.ebi.arrayexpress2.magetab.validator.AbstractValidator<T> (implements uk.ac.ebi.arrayexpress2.magetab.validator.Validator<T>)
    • uk.ac.ebi.arrayexpress2.magetab.validator.IDFValidator
    • uk.ac.ebi.arrayexpress2.magetab.validator.MAGETABValidator
    • uk.ac.ebi.arrayexpress2.magetab.validator.SDRFValidator
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.ADFLayout (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.Layout<T>)
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.ArrayDesignAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
    • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.ArrayDesignFileAttributeReader
    • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.ArrayDesignRefAttributeReader
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.CharacteristicsAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute.ControlTypeAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute.ADFAttributeReader)
  • org.isatools.tablib.export.graph2tab.DefaultAbstractNode (implements org.isatools.tablib.export.graph2tab.Node)
    • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.SDRFNodeWrapper<T>
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ArrayDataMatrixNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ArrayDataNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ArrayDesignNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.AssayNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.DerivedArrayDataMatrixNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.DerivedArrayDataNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ExtractNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.HybridizationNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ImageNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.LabeledExtractNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.NormalizationNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ProtocolApplicationNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.SampleNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ScanNodeWrapper
      • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.SourceNodeWrapper
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.FactorValueAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.utils.GraphUtils
  • uk.ac.ebi.arrayexpress2.magetab.handler.listener.HandlerEvent
  • uk.ac.ebi.arrayexpress2.magetab.handler.HandlerLoader
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.IDF
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.IDFLayout (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.Layout<T>)
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.LabelAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.Location (implements java.lang.Comparable<T>)
  • uk.ac.ebi.arrayexpress2.magetab.handler.visitor.LocationTracker
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.MAGETABArrayDesign
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.MAGETABInvestigation
  • uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.MaterialTypeAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.ParameterValueAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.PerformerAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.listener.ProgressEvent
  • uk.ac.ebi.arrayexpress2.magetab.listener.ProgressListenerAdapter (implements uk.ac.ebi.arrayexpress2.magetab.listener.ProgressListener)
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.ProviderAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute.ReporterGroupAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute.ADFAttributeReader)
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.SDRFLayout (implements uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.Layout<T>)
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.calc.SDRFLayoutCalculator
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFReadUtils
  • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.SDRFScannerChannelMapper (implements uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ScannerChannelMapper)
  • org.isatools.tablib.export.graph2tab.TableBuilder
    • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ModelTableBuilder
  • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableDataHandler (implements uk.ac.ebi.arrayexpress2.magetab.utils.tab.ITableDataHandler)
    • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableSectionDataHandler
    • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableSectionDetectingDataHandler
  • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableParser
  • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableParserRunner
  • uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.TechnologyTypeAttributeReader (implements uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • uk.ac.ebi.arrayexpress2.magetab.exception.ParseException
        • uk.ac.ebi.arrayexpress2.magetab.exception.ConversionException
        • uk.ac.ebi.arrayexpress2.magetab.exception.IllegalLineLengthException
        • uk.ac.ebi.arrayexpress2.magetab.exception.InconsistentEntryCountException
        • uk.ac.ebi.arrayexpress2.magetab.exception.UnmatchedTagException
        • uk.ac.ebi.arrayexpress2.magetab.exception.ValidateException
      • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableParserException
  • java.io.Writer (implements java.lang.Appendable, java.io.Closeable, java.io.Flushable)
    • uk.ac.ebi.arrayexpress2.magetab.renderer.ADFWriter
    • uk.ac.ebi.arrayexpress2.magetab.renderer.IDFWriter
    • uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.SDRFGraphWriter
    • uk.ac.ebi.arrayexpress2.magetab.renderer.SDRFWriter

Interface Hierarchy

• uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ADFAttribute
• uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute.ADFAttributeReader
• uk.ac.ebi.arrayexpress2.magetab.converter.Converter<S,T>
• java.util.EventListener
  • uk.ac.ebi.arrayexpress2.magetab.listener.ErrorItemListener
  • uk.ac.ebi.arrayexpress2.magetab.handler.listener.HandlerListener
  • uk.ac.ebi.arrayexpress2.magetab.listener.ProgressListener
• uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Graph<S>
• uk.ac.ebi.arrayexpress2.magetab.handler.Handler
  • uk.ac.ebi.arrayexpress2.magetab.handler.ConversionHandler<D,O>
  • uk.ac.ebi.arrayexpress2.magetab.handler.ReadHandler<H,D,T>
  • uk.ac.ebi.arrayexpress2.magetab.handler.ValidateHandler<D>
• uk.ac.ebi.arrayexpress2.magetab.handler.visitor.HandlerVisitor<T>
• uk.ac.ebi.arrayexpress2.magetab.utils.tab.ITableDataHandler
• uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.Layout<T>
• uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.ADFNode
  • uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.SDRFNode
• uk.ac.ebi.arrayexpress2.magetab.parser.Parser<T>
• uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor.ScannerChannelMapper
• uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.SDRFAttribute
• uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute.SDRFAttributeReader
• uk.ac.ebi.arrayexpress2.magetab.validator.Validator<T>

Annotation Type Hierarchy

• uk.ac.ebi.arrayexpress2.magetab.datamodel.IDFField (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • uk.ac.ebi.arrayexpress2.magetab.utils.tab.TableParser.Option
    • uk.ac.ebi.arrayexpress2.magetab.handler.listener.HandlerEvent.Type