uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node

Class FeatureNode

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.AbstractADFNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.FeatureNode

All Implemented Interfaces:

ADFNode, Node

public class FeatureNode
extends AbstractADFNode

Models "Feature" nodes in the ADF graph, according to the MAGE-TAB specification. Features comprise block column, block row, column and row integer values, designating the position of this feature on the microarray chip. The can also have comments attached.

Author:

Tony Burdett

Field Summary

Fields

Modifier and Type	Field and Description
int	blockColumn
int	blockRow
int	column
Map<String,String>	comments
int	row

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

nodeName

Constructor Summary

Constructors

Constructor and Description
FeatureNode()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj) Nodes are determined to be equal() if they are of the same class, have the same Node.getNodeType() value and the same AbstractNode.getNodeName() value.
String	getNodeType() Get the type of this node in the graph.
int	hashCode()
String[]	headers() Returns a string array representing the headers of this node and all it's attributes.
String[]	values() Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers.

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

addChildNode, addChildNode, addParentNode, addParentNode, getChildNodes, getLog, getNodeName, getParentNodes, removeChildNode, removeParentNode, setNodeName, toString, updateChildNode, updateParentNode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node

addChildNode, addChildNode, addParentNode, addParentNode, getChildNodes, getNodeName, getParentNodes, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Field Detail

blockColumn

public int blockColumn

blockRow

public int blockRow

column

public int column

row

public int row

comments

public Map<String,String> comments

Constructor Detail

FeatureNode

public FeatureNode()

Method Detail

equals

public boolean equals(Object obj)

Description copied from class: AbstractNode

Nodes are determined to be equal() if they are of the same class, have the same Node.getNodeType() value and the same AbstractNode.getNodeName() value.

Overrides:

equals in class AbstractNode

Parameters:

obj - the object to compare for equality

Returns:

true if these objects are equal, false otherwise

hashCode

public int hashCode()

Overrides:

hashCode in class AbstractNode

headers

public String[] headers()

Description copied from interface: ADFNode

Returns a string array representing the headers of this node and all it's attributes.

Returns:

the headers unique to this node

values

public String[] values()

Description copied from interface: ADFNode

Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers. So, ADFNode.headers() and ADFNode.values() have exactly the same length and the same order.

Returns:

the values for this node

getNodeType

public String getNodeType()

Description copied from interface: Node

Get the type of this node in the graph.

Returns:

the standardised header string for this node