| Package | Description |
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.converter | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel |
Classes for constructing an in-memory datamodel of the data contained in IDF and
SDRF files, as specified by the MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node |
Classes that model the nodes in the ADF graph datastructure, as described by the
MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute |
Classes that model attributes of nodes in the ADF graph datastructure, as
described by the MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.graph |
Some high-level graph modelling classes, for representing abstract graphs.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.utils | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel.layout | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.calc | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node |
Classes that model nodes in the SDRF graph datastructure, as described by the
MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute |
Classes that model attributes of nodes in the SDRF graph datastructure, as
described by the MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.exception |
All defined exceptions thrown anywhere in the suite of tools and utilities for
working with MAGE-TAB documents and datastructures.
|
| uk.ac.ebi.arrayexpress2.magetab.handler |
Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf |
ADF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl |
Specific, concrete ADF header handler implementations.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.node |
ADF "graph part" specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute |
ADF graph handler implementations that are capable of handling data items that
represent attributes attached to a node in the ADF, as defined by the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.idf |
IDF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl |
Specific, concrete IDF handler implementations.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.listener | |
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf |
SDRF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node |
Specific handlers for SDRF node data items, as defined in the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute |
SDRF Handler implementations that are capable of handling data items that
represent attributes attached to a node, as defined by the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.visitor |
Visitor classes that can be used to visit and inspect MAGE-TAB handlers.
|
| uk.ac.ebi.arrayexpress2.magetab.listener | |
| uk.ac.ebi.arrayexpress2.magetab.parser |
Parser classes for parsing MAGE-TAB aspects.
|
| uk.ac.ebi.arrayexpress2.magetab.renderer | |
| uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor | |
| uk.ac.ebi.arrayexpress2.magetab.utils |
Some common utility classes for parsing, validating and interpreting MAGE-TAB
files.
|
| uk.ac.ebi.arrayexpress2.magetab.utils.tab | |
| uk.ac.ebi.arrayexpress2.magetab.validator |
Validator classes for validating the MAGE-TAB datamodel during parsing.
|
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