Package uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node

Specific handlers for SDRF node data items, as defined in the MAGE-TAB specification.

See: Description

Class Summary

Class	Description
ArrayDataHandler	A handler that handles array data nodes in the SDRF graph Tag: Array Data File Allowed Attributes: Array Design File/Ref, Comment
ArrayDataMatrixHandler	A handler that handles array data matrix nodes in the SDRF graph Tag: Array Data Matrix File Allowed attributes: Array Design File/Ref, Comment
AssayHandler	A handler that handles Assay nodes in the SDRF graph Tag: Assay Name Allowed attributes: Factor Value, Array Design File/Ref, Technology Type, Comment
DerivedArrayDataHandler	A handler that handles Derived Array Data nodes in the SDRF graph Tag: Derived Array Data File Allowed attributes: Array Design File/Ref, Comment
DerivedArrayDataMatrixHandler	A handler that handles Derived Array Data Matrix nodes in the SDRF graph Tag: Derived Array Data Matrix File Allowed attributes: Array Design File/Ref, Comment
ExtractHandler	A handler that handles Extract nodes in the SDRF graph Tag: Derived Array Data File Allowed attributes: Characteristics, Material Type, Description, Comment, Array Design File/Ref
FactorValueNodeHandler	A special type of 'dummy' handler for handling factor values.
HybridizationHandler	A handler that handles Hybridization nodes in the SDRF graph Tag: Hybridization Name Allowed attributes: Factor Value, Comment
ImageHandler	A handler that handles Image nodes in the SDRF graph Tag: Image File Allowed attributes: Array Design File/Ref, Comment
LabeledExtractHandler	A handler that handles Labeled Extract nodes in the SDRF graph Tag: Labeled Extract Name Allowed attributes: Characteristics, Material Type, Description, Label, Array Design File/Ref, Comment
NormalizationHandler	A handler that handles Normalization nodes in the SDRF graph Tag: Normalization Name Allowed attributes: Array Design File/Ref, Comment
ProtocolHandler	A handler that handles Protocol edges in the SDRF graph.
SampleHandler	A handler that handles Sample nodes in the SDRF graph Tag: Sample Name Allowed attributes: Characteristics, Material Type, Description, Comment, Array Design File/Ref
ScanHandler	A handler that handles Scan nodes in the SDRF graph Tag: Scan Name Allowed attributes: Factor Value, Array Design File/Ref, Comment
SDRFNodeConversionHandler<D extends SDRFNode,O>	An abstract implementation of a ConversionHandler for writing data from an SDRFNode to some external output resource.
SourceHandler	A handler that handles Source nodes in the SDRF graph Tag: Source Name Allowed attributes: Characteristics, Provider, Material Type, Description, Comment, Array Design File/Ref
UnknownHeaderHandler	A handler that can handle any node in the graph, to allow SDRFs to be parsed even when they contain unrecognised headings.

Package uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node Description

Specific handlers for SDRF node data items, as defined in the MAGE-TAB specification. The subpackage attribute defines handlers for data items that are attributes on a node.