uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node

Class ReporterNode

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.AbstractADFNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.ReporterNode

All Implemented Interfaces:

ADFNode, Node

public class ReporterNode
extends AbstractADFNode

Models "Reporter" nodes in the ADF graph, according to the MAGE-TAB specification. Reporters can have sequences, database entries, and reporter group and control type attributes attached. They can also have attached comments.

Author:

Tony Burdett

Field Summary

Fields

Modifier and Type	Field and Description
Map<String,String>	comments
List<ControlTypeAttribute>	controlTypeAttributes
Map<String,List<String>>	reporterDatabaseEntries
List<ReporterGroupAttribute>	reporterGroupAttributes
String	reporterSequence

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

nodeName

Constructor Summary

Constructors

Constructor and Description
ReporterNode()

Method Summary

Methods

Modifier and Type	Method and Description
String	getNodeType() Get the type of this node in the graph.
String[]	headers() Returns a string array representing the headers of this node and all it's attributes.
String[]	values() Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers.

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

addChildNode, addChildNode, addParentNode, addParentNode, equals, getChildNodes, getLog, getNodeName, getParentNodes, hashCode, removeChildNode, removeParentNode, setNodeName, toString, updateChildNode, updateParentNode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node

addChildNode, addChildNode, addParentNode, addParentNode, getChildNodes, getNodeName, getParentNodes, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Field Detail

reporterSequence

public String reporterSequence

reporterDatabaseEntries

public Map<String,List<String>> reporterDatabaseEntries

reporterGroupAttributes

public List<ReporterGroupAttribute> reporterGroupAttributes

controlTypeAttributes

public List<ControlTypeAttribute> controlTypeAttributes

comments

public Map<String,String> comments

Constructor Detail

ReporterNode

public ReporterNode()

Method Detail

headers

public String[] headers()

Description copied from interface: ADFNode

Returns a string array representing the headers of this node and all it's attributes.

Returns:

the headers unique to this node

values

public String[] values()

Description copied from interface: ADFNode

Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers. So, ADFNode.headers() and ADFNode.values() have exactly the same length and the same order.

Returns:

the values for this node

getNodeType

public String getNodeType()

Description copied from interface: Node

Get the type of this node in the graph.

Returns:

the standardised header string for this node