uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute

Class ReporterGroupAttribute

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.AbstractADFAttribute

uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ReporterGroupAttribute

All Implemented Interfaces:

ADFAttribute

public class ReporterGroupAttribute
extends AbstractADFAttribute

Models a reporter group attribute in the MAGE-TAB SDRF specification. Reporter groups can be typed (with square brackets) and have a term source reference and accession.

Author:

Tony Burdett

Field Summary

Fields

Modifier and Type	Field and Description
String	termAccessionNumber
String	termSourceREF
String	type

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.AbstractADFAttribute

attributeValue

Constructor Summary

Constructors

Constructor and Description
ReporterGroupAttribute()

Method Summary

Methods

Modifier and Type	Method and Description
String	getAttributeType() Get the type of this attribute.
String[]	headers() Returns a string array representing the headers of this node and all it's attributes.
String[]	values() Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers.

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.AbstractADFAttribute

equals, getAttributeValue, getLog, getNodeName, getNodeType, hashCode, setAttributeValue

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

type

public String type

termSourceREF

public String termSourceREF

termAccessionNumber

public String termAccessionNumber

Constructor Detail

ReporterGroupAttribute

public ReporterGroupAttribute()

Method Detail

getAttributeType

public String getAttributeType()

Description copied from interface: ADFAttribute

Get the type of this attribute. The attribute is typed (like Nodes) by the standardised "Name" tag for the node, including any option qualifiers (such as contents of square brackets, parentheses, or prefixes in some cases).

Returns:

the attribute type, including qualifiers

headers

public String[] headers()

Description copied from interface: ADFAttribute

Returns a string array representing the headers of this node and all it's attributes.

Returns:

the headers unique to this node

values

public String[] values()

Description copied from interface: ADFAttribute

Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers. So, ADFAttribute.headers() and values have exactly the same length and the same order.

Returns:

the values for this node