uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute

Class ReporterGroupAttributeReader

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute.ReporterGroupAttributeReader

All Implemented Interfaces:

ADFAttributeReader

public class ReporterGroupAttributeReader
extends Object
implements ADFAttributeReader

Handles reporter group attributes in the ADF graph part.

Tag: Reporter Group
Allowed Child Attributes: Term Source REF, Term Accession Number

Author:

Tony Burdett

Constructor Summary

Constructors

Constructor and Description
ReporterGroupAttributeReader()

Method Summary

Methods

Modifier and Type	Method and Description
int	assess(String[] header) Returns an integer representing the number of columns this handler can read forward of the given header.
boolean	canRead(String firstHeader) Determine whether this reader can read the attributes referenced by this header.
void	readAttributes(String[] header, String[] data, ADFNode adfNode) Reads the attributes from the data and sets them on the supplied SDRFNode

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReporterGroupAttributeReader

public ReporterGroupAttributeReader()

Method Detail

canRead

public boolean canRead(String firstHeader)

Description copied from interface: ADFAttributeReader

Determine whether this reader can read the attributes referenced by this header.

Specified by:

canRead in interface ADFAttributeReader

Parameters:

firstHeader - the first column heading to read from

Returns:

true if this attribute reader can read attributes following this column heading, false otherwise

assess

public int assess(String[] header)

Description copied from interface: ADFAttributeReader

Returns an integer representing the number of columns this handler can read forward of the given header.

Specified by:

assess in interface ADFAttributeReader

Parameters:

header - the header to be passed to this attribute reader. This should start at a column this reader can actually read

Returns:

the number of columns this handler can read

readAttributes

public void readAttributes(String[] header,
                  String[] data,
                  ADFNode adfNode)
                    throws ParseException

Description copied from interface: ADFAttributeReader

Reads the attributes from the data and sets them on the supplied SDRFNode

Specified by:

readAttributes in interface ADFAttributeReader

Parameters:

header - the header to read from, starting from attributes this reader can actually read

data - the data to read

adfNode - the ADF node that these attributes should be set on

Throws:

ParseException - if the data could not be read for any reason