uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node

Class ArrayDesignNode

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ArrayDesignNode

All Implemented Interfaces:

Node, SDRFNode

Deprecated.

since version 1.1

@Deprecated
public class ArrayDesignNode
extends AbstractSDRFNode

An array design node in the graph. Array Data nodes are top level nodes and can have associated termSourceREFs and comments. Array Data nodes are slightly special, as the parser is entirely agnostic as to whether they are suffixed by "File" or "REF".

This is deprecated, as "Array Design" columns are actually attributes, not nodes, in the SDRF spec. This node type is no longer used in constructiong SDRF graphs, but is included for purposes of backwards compatibility. If your application uses nodes of this type, you should remove all references to this class as it may be removed in a future release.

Author:

Tony Burdett

Field Summary

Fields

Modifier and Type	Field and Description
Map<String,List<String>>	comments Deprecated.
String	termAccessionNumber Deprecated.
String	termSourceREF Deprecated.

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

nodeName

Constructor Summary

Constructors

Constructor and Description
ArrayDesignNode() Deprecated.

Method Summary

Methods

Modifier and Type	Method and Description
String	getNodeType() Deprecated. Get the type of this node in the graph.
String[]	headers() Deprecated.
String[]	values() Deprecated.

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode

toString

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

addChildNode, addChildNode, addParentNode, addParentNode, equals, getChildNodes, getLog, getNodeName, getParentNodes, hashCode, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node

addChildNode, addChildNode, addParentNode, addParentNode, getChildNodes, getNodeName, getParentNodes, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Field Detail

termSourceREF

public String termSourceREF

Deprecated.

termAccessionNumber

public String termAccessionNumber

Deprecated.

comments

public final Map<String,List<String>> comments

Deprecated.

Constructor Detail

ArrayDesignNode

public ArrayDesignNode()

Deprecated.

Method Detail

headers

@Deprecated
public String[] headers()

Deprecated.

Description copied from interface: SDRFNode

Returns a string array representing the headers of this node and all it's attributes.

Returns:

the headers unique to this node

values

@Deprecated
public String[] values()

Deprecated.

Description copied from interface: SDRFNode

Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers. So, SDRFNode.headers() and SDRFNode.values() have exactly the same length and the same order.

Returns:

the values for this node

getNodeType

public String getNodeType()

Deprecated.

Description copied from interface: Node

Get the type of this node in the graph.

Returns:

the standardised header string for this node