uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node

Class AssayNode

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.HybridizationNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AssayNode

All Implemented Interfaces:

Node, SDRFNode

public class AssayNode
extends HybridizationNode

An Assay Node, in the SDRF graph. Assay nodes are specializations of HybridizationNodes that have an additional technology type.

Author:

Tony Burdett

Field Summary

Fields

Modifier and Type	Field and Description
TechnologyTypeAttribute	technologyType

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.HybridizationNode

arrayDesigns, comments, factorValues

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

nodeName

Constructor Summary

Constructors

Constructor and Description
AssayNode()

Method Summary

Methods

Modifier and Type	Method and Description
String	getNodeType() Get the type of this node in the graph.
String[]	headers() Returns a string array representing the headers of this node and all it's attributes.
String[]	values(int channel) Request values by factor value attribute scanner channel.

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.HybridizationNode

values

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode

toString

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

addChildNode, addChildNode, addParentNode, addParentNode, equals, getChildNodes, getLog, getNodeName, getParentNodes, hashCode, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node

addChildNode, addChildNode, addParentNode, addParentNode, getChildNodes, getNodeName, getParentNodes, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Field Detail

technologyType

public TechnologyTypeAttribute technologyType

Constructor Detail

AssayNode

public AssayNode()

Method Detail

headers

public String[] headers()

Description copied from interface: SDRFNode

Returns a string array representing the headers of this node and all it's attributes.

Specified by:

headers in interface SDRFNode

Overrides:

headers in class HybridizationNode

Returns:

the headers unique to this node

values

public String[] values(int channel)

Request values by factor value attribute scanner channel. The returned String array will include only Cy3 or Cy5, and single channel, factor values depending on those requested.

Overrides:

values in class HybridizationNode

Parameters:

channel - the channel to return values for

Returns:

the values, formatted by scanner channel

getNodeType

public String getNodeType()

Description copied from interface: Node

Get the type of this node in the graph.

Specified by:

getNodeType in interface Node

Overrides:

getNodeType in class HybridizationNode

Returns:

the standardised header string for this node