uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node

Class ExtractNode

java.lang.Object

uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode

uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ExtractNode

All Implemented Interfaces:

Node, SDRFNode

public class ExtractNode
extends AbstractSDRFNode

An extract node in the graph. Extract nodes are top level nodes and can have associated characteristics, material types, descriptions, and sets of comments.

Author:

Tony Burdett

Field Summary

Fields

Modifier and Type	Field and Description
List<CharacteristicsAttribute>	characteristics
Map<String,List<String>>	comments
String	description
MaterialTypeAttribute	materialType

Fields inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

nodeName

Constructor Summary

Constructors

Constructor and Description
ExtractNode()

Method Summary

Methods

Modifier and Type	Method and Description
String	getNodeType() Get the type of this node in the graph.
String[]	headers() Returns a string array representing the headers of this node and all it's attributes.
String[]	values() Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers.

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.AbstractSDRFNode

toString

Methods inherited from class uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.AbstractNode

addChildNode, addChildNode, addParentNode, addParentNode, equals, getChildNodes, getLog, getNodeName, getParentNodes, hashCode, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node

addChildNode, addChildNode, addParentNode, addParentNode, getChildNodes, getNodeName, getParentNodes, removeChildNode, removeParentNode, setNodeName, updateChildNode, updateParentNode

Field Detail

characteristics

public final List<CharacteristicsAttribute> characteristics

materialType

public MaterialTypeAttribute materialType

description

public String description

comments

public Map<String,List<String>> comments

Constructor Detail

ExtractNode

public ExtractNode()

Method Detail

headers

public String[] headers()

Description copied from interface: SDRFNode

Returns a string array representing the headers of this node and all it's attributes.

Returns:

the headers unique to this node

values

public String[] values()

Description copied from interface: SDRFNode

Returns the strings representing the values of this node and all it's attributes, indexed by the matching headers. So, SDRFNode.headers() and SDRFNode.values() have exactly the same length and the same order.

Returns:

the values for this node

getNodeType

public String getNodeType()

Description copied from interface: Node

Get the type of this node in the graph.

Returns:

the standardised header string for this node