uk.ac.ebi.arrayexpress2.magetab.handler

Interface ReadHandler<H,D,T>

All Superinterfaces:

Handler

All Known Implementing Classes:

AccessionHandler, AccessionHandler, ADFGraphReadHandler, ADFHeaderReadHandler, ArrayDataHandler, ArrayDataMatrixHandler, ArrayDesignNameHandler, AssayHandler, CommentHandler, CommentHandler, CompositeElementHandler, DateOfExperimentHandler, DerivedArrayDataHandler, DerivedArrayDataMatrixHandler, ExperimentalDesignHandler, ExperimentalDesignTermAccessionHandler, ExperimentalDesignTermSourceRefHandler, ExperimentalFactorNameHandler, ExperimentalFactorTermAccessionHandler, ExperimentalFactorTermSourceRefHandler, ExperimentalFactorTypeHandler, ExperimentDescriptionHandler, ExtractHandler, FactorValueNodeHandler, FeatureHandler, HybridizationHandler, IDFReadHandler, ImageHandler, InvestigationTitleHandler, LabeledExtractHandler, MAGETABVersionHandler, NormalizationHandler, NormalizationTermAccessionHandler, NormalizationTermSourceRefHandler, NormalizationTypeHandler, PersonAddressHandler, PersonAffiliationHandler, PersonEmailHandler, PersonFaxHandler, PersonFirstNameHandler, PersonLastNameHandler, PersonMidInitialsHandler, PersonPhoneHandler, PersonRolesHandler, PersonRolesTermAccessionHandler, PersonRolesTermSourceRefHandler, PrintingProtocolHandler, ProtocolContactHandler, ProtocolDescriptionHandler, ProtocolHandler, ProtocolHardwareHandler, ProtocolNameHandler, ProtocolParametersHandler, ProtocolSoftwareHandler, ProtocolTermAccessionHandler, ProtocolTermSourceRefHandler, ProtocolTypeHandler, ProviderHandler, PublicationAuthorListHandler, PublicationDoiHandler, PublicationStatusHandler, PublicationStatusTermAccessionHandler, PublicationStatusTermSourceRefHandler, PublicationTitleHandler, PublicReleaseDateHandler, PubMedIdHandler, QualityControlTermAccessionHandler, QualityControlTermSourceRefHandler, QualityControlTypeHandler, ReplicateTermAccessionHandler, ReplicateTermSourceRefHandler, ReplicateTypeHandler, ReporterHandler, SampleHandler, ScanHandler, SDRFFileHandler, SDRFReadHandler, SDRFReadInContextHandler, SequencePolymerTypeHandler, SequencePolymerTypeTermAccessionHandler, SequencePolymerTypeTermSourceRefHandler, SourceHandler, SubstrateTypeHandler, SubstrateTypeTermAccessionHandler, SubstrateTypeTermSourceRefHandler, SurfaceTypeHandler, SurfaceTypeTermAccessionHandler, SurfaceTypeTermSourceRefHandler, TechnologyTypeHandler, TechnologyTypeTermAccessionHandler, TechnologyTypeTermSourceRefHandler, TermSourceFileHandler, TermSourceFileHandler, TermSourceNameHandler, TermSourceNameHandler, TermSourceVersionHandler, TermSourceVersionHandler, UnknownHeaderHandler, VersionHandler

@Spi
public interface ReadHandler<H,D,T>
extends Handler

A type of Handler that enables read functionality over a section of MAGE-TAB.

Author:

Tony Burdett

Method Summary

Methods

Modifier and Type	Method and Description
boolean	canRead(Object header) Determine whether this handler can read the supplied header.
void	read(H header, D data, T target, int lineNumber, int columnNumber) Cause the handler to read the supplied data into the supplied target object.

Methods inherited from interface uk.ac.ebi.arrayexpress2.magetab.handler.Handler

accept, addListener, getListeners, removeListener

Method Detail

canRead

boolean canRead(Object header)

Determine whether this handler can read the supplied header. Typically, the data will be a String or String array depending on whether IDF, SDRF or ADF is being read, although the general framework can be extended to parse any data type.

This header should be passed to the handler prior to reading to determine whether this handler can handle it

Parameters:

header - the data that will be validated

Returns:

true if this handler can handle this tag, false otherwise

read

void read(H header,
        D data,
        T target,
        int lineNumber,
        int columnNumber)
          throws ParseException

Cause the handler to read the supplied data into the supplied target object.

Parameters:

header - the header identifying the type of the data

data - the data to be read

target - the object that the data will be read into

lineNumber - the line number of the field this data was read from

columnNumber - the column number of the field this data was read from

Throws:

ParseException - if parsing failed