Uses of Class
uk.ac.ebi.arrayexpress2.magetab.exception.ParseException

Packages that use ParseException

Package	Description
uk.ac.ebi.arrayexpress2.magetab.datamodel	Classes for constructing an in-memory datamodel of the data contained in IDF and SDRF files, as specified by the MAGE-TAB specification.
uk.ac.ebi.arrayexpress2.magetab.datamodel.graph	Some high-level graph modelling classes, for representing abstract graphs.
uk.ac.ebi.arrayexpress2.magetab.exception	All defined exceptions thrown anywhere in the suite of tools and utilities for working with MAGE-TAB documents and datastructures.
uk.ac.ebi.arrayexpress2.magetab.handler	Handler classes, interfaces and utilities for interpreting MAGE-TAB documents and converting to objects in the datamodel and ArrayExpress 2 domain model.
uk.ac.ebi.arrayexpress2.magetab.handler.adf	ADF specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl	Specific, concrete ADF header handler implementations.
uk.ac.ebi.arrayexpress2.magetab.handler.adf.node	ADF "graph part" specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute	ADF graph handler implementations that are capable of handling data items that represent attributes attached to a node in the ADF, as defined by the MAGE-TAB specification.
uk.ac.ebi.arrayexpress2.magetab.handler.idf	IDF specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl	Specific, concrete IDF handler implementations.
uk.ac.ebi.arrayexpress2.magetab.handler.sdrf	SDRF specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node	Specific handlers for SDRF node data items, as defined in the MAGE-TAB specification.
uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute	SDRF Handler implementations that are capable of handling data items that represent attributes attached to a node, as defined by the MAGE-TAB specification.
uk.ac.ebi.arrayexpress2.magetab.parser	Parser classes for parsing MAGE-TAB aspects.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.datamodel

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel that throw ParseException

Modifier and Type	Method and Description
void	ADF.storeNode(ADFNode node) Deprecated. since version 1.1, use AbstractGraph.addNode(uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node) instead
void	SDRF.storeNode(SDRFNode node) Deprecated. since version 1.1, use AbstractGraph.addNode(uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node) instead

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.datamodel.graph

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel.graph that throw ParseException

Modifier and Type	Method and Description
void	AbstractGraph.addNode(S node)
void	Graph.addNode(S node) Store a node in the Graph.
void	AbstractGraph.checkForCycles(Node node, Node childNode)
void	Graph.checkForCycles(Node node, Node childNode) Assertain whether this graph contains any cycles.
void	AbstractGraph.resolveGraphStructure(S node)
void	Graph.resolveGraphStructure(S node) Update this node being stored with appropriate references to it's parents and update any child node references that are already present in the graph.
void	AbstractGraph.updateNode(S node)
void	Graph.updateNode(S node) Updates an node in the SDRF graph, on the assumption that its position in the graph, or its children, have been altered.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.exception

Subclasses of ParseException in uk.ac.ebi.arrayexpress2.magetab.exception

Modifier and Type	Class and Description
class	ConversionException A ParseException that gets thrown whenever part of a MAGETABInvestigation or a MAGETABInvestigation fails a conversion process.
class	IllegalLineLengthException A ParseException that is thrown whenever a line parsed from a TDT file is an illegal length.
class	InconsistentEntryCountException A ParseException that is thrown when the number of entries in a spreadsheet is not consistent, for example when an fixed size matrix is expected but column lengths are variable.
class	UnmatchedTagException A ParseException that gets thrown whenever a tag in a TDT file is mismatched when compared to the expected one, or if the content type is wrong for the header.
class	ValidateException A ParseException that gets thrown whenever part of a MAGETABInvestigation or a MAGETABInvestigation fails a validation process.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler

Methods in uk.ac.ebi.arrayexpress2.magetab.handler that throw ParseException

Modifier and Type	Method and Description
void	ReadHandler.read(H header, D data, T target, int lineNumber, int columnNumber) Cause the handler to read the supplied data into the supplied target object.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.adf

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf that throw ParseException

Modifier and Type	Method and Description
void	ADFGraphReadHandler.read(String[] header, String[] data, ADF adf, int lineNumber, int columnNumber)
void	ADFHeaderReadHandler.read(String header, String[] data, ADF adf, int lineNumber, int columnNumber) Invoke this read handler.
protected int	ADFGraphReadHandler.readAttribute(ADFAttributeReader reader, String[] header, String[] data, ADFNode parentNode, int startIndex)
protected abstract void	ADFGraphReadHandler.readData(String[] header, String[] data, ADF adf, int lineNumber, int columnNumber) Performs the unit of work to read the data into the internal datamodel.
protected abstract void	ADFHeaderReadHandler.readValue(ADF adf, String value, int lineNumber, String... types) Performs the unit of work to read the data into the internal MAGE-TAB investigation.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl that throw ParseException

Modifier and Type	Method and Description
protected void	ProviderHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SurfaceTypeTermSourceRefHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SequencePolymerTypeHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SurfaceTypeHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	AccessionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	TechnologyTypeHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	TermSourceNameHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	TechnologyTypeTermAccessionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SurfaceTypeTermAccessionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	CommentHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SequencePolymerTypeTermSourceRefHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	VersionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SubstrateTypeTermAccessionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SequencePolymerTypeTermAccessionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	TermSourceVersionHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SubstrateTypeHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	ArrayDesignNameHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	SubstrateTypeTermSourceRefHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	PrintingProtocolHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	TechnologyTypeTermSourceRefHandler.readValue(ADF adf, String value, int lineNumber, String... types)
protected void	TermSourceFileHandler.readValue(ADF adf, String value, int lineNumber, String... types)

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node that throw ParseException

Modifier and Type	Method and Description
protected void	CompositeElementHandler.readData(String[] header, String[] data, ADF adf, int lineNumber, int columnNumber)
protected void	FeatureHandler.readData(String[] header, String[] value, ADF adf, int lineNumber, int columnNumber)
protected void	ReporterHandler.readData(String[] header, String[] data, ADF adf, int lineNumber, int columnNumber)

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute that throw ParseException

Modifier and Type	Method and Description
void	ControlTypeAttributeReader.readAttributes(String[] header, String[] data, ADFNode adfNode)
void	ReporterGroupAttributeReader.readAttributes(String[] header, String[] data, ADFNode adfNode)
void	ADFAttributeReader.readAttributes(String[] header, String[] data, ADFNode adfNode) Reads the attributes from the data and sets them on the supplied SDRFNode

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.idf

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.idf that throw ParseException

Modifier and Type	Method and Description
void	IDFReadHandler.read(String header, String[] data, IDF idf, int lineNumber, int columnNumber) Invoke this read handler.
protected abstract void	IDFReadHandler.readValue(IDF idf, String value, int lineNumber, String... types) Performs the unit of work to read the data into the internal MAGE-TAB investigation.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl that throw ParseException

Modifier and Type	Method and Description
protected void	ExperimentalDesignTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolSoftwareHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicationStatusTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentalFactorTypeHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolHardwareHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	QualityControlTypeHandler.readValue(IDF idf, String value, int lineNumber, String... types)
void	AccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonRolesTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ReplicateTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicationDoiHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	TermSourceNameHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicReleaseDateHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonMidInitialsHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolDescriptionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicationAuthorListHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentalFactorTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonAddressHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonFirstNameHandler.readValue(IDF idf, String value, int lineNumber, String... types)
void	CommentHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonEmailHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolNameHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	NormalizationTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ReplicateTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolContactHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	QualityControlTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicationStatusTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentalDesignTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonLastNameHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	TermSourceVersionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	SDRFFileHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PubMedIdHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolTypeHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	InvestigationTitleHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ReplicateTypeHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	NormalizationTypeHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	DateOfExperimentHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentDescriptionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentalFactorTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	NormalizationTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonFaxHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonAffiliationHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentalFactorNameHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ProtocolParametersHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	ExperimentalDesignHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonRolesTermAccessionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	QualityControlTermSourceRefHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicationStatusHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonRolesHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	TermSourceFileHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PersonPhoneHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	MAGETABVersionHandler.readValue(IDF idf, String value, int lineNumber, String... types)
protected void	PublicationTitleHandler.readValue(IDF idf, String value, int lineNumber, String... types)

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf that throw ParseException

Modifier and Type	Method and Description
protected <T extends SDRFNode> T	SDRFReadInContextHandler.fetchUpstreamNode(SDRF sdrf, String nodeName, Class<T> nodeClass) Used for adding nodes that are upstream of the current node in the SDRF graph.
protected SDRFNode	SDRFReadInContextHandler.handleUpstreamNode(SDRF sdrf, String nodeName, String nodeType, int lineNumber, int columnNumber) Used for adding nodes that are upstream of the current node in the SDRF graph.
void	SDRFReadInContextHandler.read(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	SDRFReadHandler.read(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
protected int	SDRFReadHandler.readAttribute(SDRFAttributeReader reader, String[] header, String[] data, SDRF sdrf, SDRFNode parentNode, int lineNumber, int columnNumber, int startIndex)
protected abstract void	SDRFReadHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber) Performs the unit of work to read the data into the internal datamodel.
abstract void	SDRFReadInContextHandler.readDataFrom(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber) Performs the unit of work to read the data into the internal datamodel.
void	SDRFReadInContextHandler.readFrom(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber) Cause the handler to read some of the supplied data (usually starting from startIndex) into the supplied target object, using additional context information where appropriate.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node that throw ParseException

Modifier and Type	Method and Description
void	DerivedArrayDataHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	LabeledExtractHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	NormalizationHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	ScanHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	ImageHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	ArrayDataMatrixHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	ProtocolHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	AssayHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	FactorValueNodeHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	ExtractHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	DerivedArrayDataMatrixHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
protected void	ArrayDataHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
protected void	UnknownHeaderHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	SourceHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	SampleHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	HybridizationHandler.readData(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber)
void	ProtocolHandler.readDataFrom(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber) A specialised alternate form of the SDRFReadInContextHandler.canReadHeader(String[]) method for handling Protocol Application Nodes.
void	FactorValueNodeHandler.readDataFrom(String[] header, String[] data, SDRF sdrf, int lineNumber, int columnNumber) A specialised alternate form of the SDRFReadHandler.readData(String[], String[], uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF, int, int) method, specialised for handling Factor Value "floating" nodes.

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute that throw ParseException

Modifier and Type	Method and Description
void	PerformerAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	MaterialTypeAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	TechnologyTypeAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	LabelAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	ArrayDesignAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode parentNode, int lineNumber, int columnNumber)
void	ParameterValueAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	ProviderAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	SDRFAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber) Reads the attributes from the data and sets them on the supplied SDRFNode
void	FactorValueAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode sdrfNode, int lineNumber, int columnNumber)
void	CharacteristicsAttributeReader.readAttributes(String[] header, String[] data, SDRF sdrf, SDRFNode parentNode, int lineNumber, int columnNumber)

Uses of ParseException in uk.ac.ebi.arrayexpress2.magetab.parser

Methods in uk.ac.ebi.arrayexpress2.magetab.parser that throw ParseException

Modifier and Type	Method and Description
MAGETABInvestigation	MAGETABParser.parse(File idfFile)
MAGETABArrayDesign	MAGETABArrayParser.parse(File adfFile)
IDF	IDFParser.parse(File idfFile)
SDRF	SDRFParser.parse(File sdrfFile)
ADF	ADFParser.parse(InputStream adfIn) Performs parsing from the specified input stream source, populating an ADF object which is returned.
MAGETABInvestigation	MAGETABParser.parse(InputStream idfIn)
T	Parser.parse(InputStream dataIn) Perform parsing from the supplied input stream to a new data model instance.
MAGETABArrayDesign	MAGETABArrayParser.parse(InputStream adfIn)
IDF	IDFParser.parse(InputStream idfIn) Performs parsing from the specified input stream source, populating an IDF object which is returned.
SDRF	SDRFParser.parse(InputStream sdrfIn) Performs parsing from the specified input stream source, populating an SDRF object which is returned.
ADF	ADFParser.parse(InputStream adfIn, ADF adf)
ADF	ADFParser.parse(InputStream adfIn, ADF adf, ExecutorService service)
IDF	IDFParser.parse(InputStream idfIn, IDF idf) Alternate form of the IDFParser.parse(java.io.InputStream) method that allows callers to specify the IDF object they want to be populated.
IDF	IDFParser.parse(InputStream idfIn, IDF idf, ExecutorService service) Alternate form of the IDFParser.parse(java.io.InputStream) method that allows callers to specify both the IDF object they wish to be populated and an executor service that should be used to execute all IDF handler tasks.
MAGETABArrayDesign	MAGETABArrayParser.parse(InputStream adfIn, MAGETABArrayDesign arrayDesign)
MAGETABArrayDesign	MAGETABArrayParser.parse(InputStream adfIn, MAGETABArrayDesign arrayDesign, ExecutorService service)
MAGETABInvestigation	MAGETABParser.parse(InputStream idfIn, MAGETABInvestigation investigation)
MAGETABInvestigation	MAGETABParser.parse(InputStream idfIn, MAGETABInvestigation investigation, ExecutorService service)
SDRF	SDRFParser.parse(InputStream sdrfIn, SDRF sdrf) Alternate form of the SDRFParser.parse(java.io.InputStream) method that allows callers to specify the SDRF object they want to be populated.
SDRF	SDRFParser.parse(InputStream sdrfIn, SDRF sdrf, ExecutorService service) Alternate form of the SDRFParser.parse(java.io.InputStream) method that allows callers to specify both the SDRF object they wish to be populated and an executor service that should be used to execute all SDRF handler tasks.
T	Parser.parse(InputStream dataIn, T target) Perform parsing from the supplied input stream to a new data model instance.
T	Parser.parse(InputStream dataIn, T target, ExecutorService service) Perform parsing from the supplied input stream to a new data model instance, delegating all work to the supplied Executor Service to enable parsing in parallel.
MAGETABInvestigation	MAGETABParser.parse(URL idfURL)
MAGETABArrayDesign	MAGETABArrayParser.parse(URL adfURL)
IDF	IDFParser.parse(URL idfURL)
SDRF	SDRFParser.parse(URL sdrfURL)