Uses of Interface
uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.ADFNode

Packages that use ADFNode

Package	Description
uk.ac.ebi.arrayexpress2.magetab.datamodel	Classes for constructing an in-memory datamodel of the data contained in IDF and SDRF files, as specified by the MAGE-TAB specification.
uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node	Classes that model the nodes in the ADF graph datastructure, as described by the MAGE-TAB specification.
uk.ac.ebi.arrayexpress2.magetab.datamodel.layout
uk.ac.ebi.arrayexpress2.magetab.handler.adf	ADF specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.adf.node	ADF "graph part" specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute	ADF graph handler implementations that are capable of handling data items that represent attributes attached to a node in the ADF, as defined by the MAGE-TAB specification.

Uses of ADFNode in uk.ac.ebi.arrayexpress2.magetab.datamodel

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel with type parameters of type ADFNode

Modifier and Type	Method and Description
<T extends ADFNode> T	ADF.lookupNode(String nodeName, Class<T> nodeType) Deprecated. since version 1.1, use AbstractGraph.getNode(String, Class) instead
<T extends ADFNode> Collection<T>	ADF.lookupNodes(Class<T> nodeType) Deprecated. since version 1.1, use AbstractGraph.getNodes(Class) instead

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel that return ADFNode

Modifier and Type	Method and Description
ADFNode	ADF.lookupNode(String nodeName, String nodeType) Deprecated. since version 1.1, use AbstractGraph.getNode(String, String) instead

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel that return types with arguments of type ADFNode

Modifier and Type	Method and Description
Collection<? extends ADFNode>	ADF.lookupNodes(String nodeType) Deprecated. since version 1.1, use AbstractGraph.getNodes(String) instead

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel with parameters of type ADFNode

Modifier and Type	Method and Description
void	ADF.removeNodeFromGraph(ADFNode node) Deprecated. since version 1.1, use AbstractGraph.removeNode(uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node) instead
void	ADF.storeNode(ADFNode node) Deprecated. since version 1.1, use AbstractGraph.addNode(uk.ac.ebi.arrayexpress2.magetab.datamodel.graph.Node) instead

Method parameters in uk.ac.ebi.arrayexpress2.magetab.datamodel with type arguments of type ADFNode

Modifier and Type	Method and Description
boolean	ADF.hasBeenHandled(String nodeName, Class<? extends ADFNode> nodeType) Determine whether a given node has been handled already, and exists in the graph.

Uses of ADFNode in uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node

Classes in uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node that implement ADFNode

Modifier and Type	Class and Description
class	AbstractADFNode An abstract top-level implementation of an ADFNode.
class	CompositeElementNode Models "Composite Element" nodes in the ADF graph, according to the MAGE-TAB specification.
class	FeatureNode Models "Feature" nodes in the ADF graph, according to the MAGE-TAB specification.
class	ReporterNode Models "Reporter" nodes in the ADF graph, according to the MAGE-TAB specification.

Uses of ADFNode in uk.ac.ebi.arrayexpress2.magetab.datamodel.layout

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel.layout that return ADFNode

Modifier and Type	Method and Description
ADFNode	ADFLayout.getNode(Location location)

Methods in uk.ac.ebi.arrayexpress2.magetab.datamodel.layout with parameters of type ADFNode

Modifier and Type	Method and Description
void	ADFLayout.addNodeLocation(ADFNode node, Location location)

Uses of ADFNode in uk.ac.ebi.arrayexpress2.magetab.handler.adf

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf with parameters of type ADFNode

Modifier and Type	Method and Description
protected int	ADFGraphReadHandler.readAttribute(ADFAttributeReader reader, String[] header, String[] data, ADFNode parentNode, int startIndex)
protected void	ADFGraphReadHandler.updateChildNode(String[] header, String[] data, ADFNode node, int valueIndex)

Uses of ADFNode in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node

Classes in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node with type parameters of type ADFNode

Modifier and Type	Class and Description
class	ADFNodeConversionHandler<D extends ADFNode,O> An abstract implementation of a ConversionHandler for writing data from an ADFNode to some external output resource.

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node with parameters of type ADFNode

Modifier and Type	Method and Description
protected abstract boolean	ADFNodeConversionHandler.canConvertData(ADFNode data) Performs specific checks on the ADFNode to determine if this handler can convert it.

Uses of ADFNode in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute

Methods in uk.ac.ebi.arrayexpress2.magetab.handler.adf.node.attribute with parameters of type ADFNode

Modifier and Type	Method and Description
void	ControlTypeAttributeReader.readAttributes(String[] header, String[] data, ADFNode adfNode)
void	ReporterGroupAttributeReader.readAttributes(String[] header, String[] data, ADFNode adfNode)
void	ADFAttributeReader.readAttributes(String[] header, String[] data, ADFNode adfNode) Reads the attributes from the data and sets them on the supplied SDRFNode