Uses of Class
uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.SDRFReadHandler

Packages that use SDRFReadHandler

Package	Description
uk.ac.ebi.arrayexpress2.magetab.handler	Handler classes, interfaces and utilities for interpreting MAGE-TAB documents and converting to objects in the datamodel and ArrayExpress 2 domain model.
uk.ac.ebi.arrayexpress2.magetab.handler.sdrf	SDRF specific handler classes.
uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node	Specific handlers for SDRF node data items, as defined in the MAGE-TAB specification.

Uses of SDRFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler

Methods in uk.ac.ebi.arrayexpress2.magetab.handler that return types with arguments of type SDRFReadHandler

Modifier and Type	Method and Description
Collection<SDRFReadHandler>	HandlerLoader.getSDRFReadHandlers(String[] header) Lookup SDRF reading handlers that can read a particular header.

Uses of SDRFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf

Subclasses of SDRFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf

Modifier and Type	Class and Description
class	SDRFReadInContextHandler An implementation of an SDRFReadHandler that defines two extra methods that allow extra contextual data to be passed to concrete implementations.

Uses of SDRFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node

Subclasses of SDRFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node

Modifier and Type	Class and Description
class	ArrayDataHandler A handler that handles array data nodes in the SDRF graph Tag: Array Data File Allowed Attributes: Array Design File/Ref, Comment
class	ArrayDataMatrixHandler A handler that handles array data matrix nodes in the SDRF graph Tag: Array Data Matrix File Allowed attributes: Array Design File/Ref, Comment
class	AssayHandler A handler that handles Assay nodes in the SDRF graph Tag: Assay Name Allowed attributes: Factor Value, Array Design File/Ref, Technology Type, Comment
class	DerivedArrayDataHandler A handler that handles Derived Array Data nodes in the SDRF graph Tag: Derived Array Data File Allowed attributes: Array Design File/Ref, Comment
class	DerivedArrayDataMatrixHandler A handler that handles Derived Array Data Matrix nodes in the SDRF graph Tag: Derived Array Data Matrix File Allowed attributes: Array Design File/Ref, Comment
class	ExtractHandler A handler that handles Extract nodes in the SDRF graph Tag: Derived Array Data File Allowed attributes: Characteristics, Material Type, Description, Comment, Array Design File/Ref
class	FactorValueNodeHandler A special type of 'dummy' handler for handling factor values.
class	HybridizationHandler A handler that handles Hybridization nodes in the SDRF graph Tag: Hybridization Name Allowed attributes: Factor Value, Comment
class	ImageHandler A handler that handles Image nodes in the SDRF graph Tag: Image File Allowed attributes: Array Design File/Ref, Comment
class	LabeledExtractHandler A handler that handles Labeled Extract nodes in the SDRF graph Tag: Labeled Extract Name Allowed attributes: Characteristics, Material Type, Description, Label, Array Design File/Ref, Comment
class	NormalizationHandler A handler that handles Normalization nodes in the SDRF graph Tag: Normalization Name Allowed attributes: Array Design File/Ref, Comment
class	ProtocolHandler A handler that handles Protocol edges in the SDRF graph.
class	SampleHandler A handler that handles Sample nodes in the SDRF graph Tag: Sample Name Allowed attributes: Characteristics, Material Type, Description, Comment, Array Design File/Ref
class	ScanHandler A handler that handles Scan nodes in the SDRF graph Tag: Scan Name Allowed attributes: Factor Value, Array Design File/Ref, Comment
class	SourceHandler A handler that handles Source nodes in the SDRF graph Tag: Source Name Allowed attributes: Characteristics, Provider, Material Type, Description, Comment, Array Design File/Ref
class	UnknownHeaderHandler A handler that can handle any node in the graph, to allow SDRFs to be parsed even when they contain unrecognised headings.