| Package | Description |
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.converter | |
| uk.ac.ebi.arrayexpress2.magetab.handler |
Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf |
ADF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.node |
ADF "graph part" specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.idf |
IDF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf |
SDRF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node |
Specific handlers for SDRF node data items, as defined in the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.parser |
Parser classes for parsing MAGE-TAB aspects.
|
| Modifier and Type | Method and Description |
|---|---|
void |
IDFConverter.convert(IDF idf,
O outputResource) |
void |
IDFConverter.convert(IDF idf,
O outputResource,
ExecutorService service) |
void |
MAGETABConverter.convert(MAGETABInvestigation investigation,
O outputResource) |
void |
MAGETABConverter.convert(MAGETABInvestigation investigation,
O outputResource,
ExecutorService service) |
void |
SDRFConverter.convert(SDRF sdrf,
O outputResource) |
void |
SDRFConverter.convert(SDRF sdrf,
O outputResource,
ExecutorService service) |
void |
Converter.convert(S source,
T target)
Converts source objects into target objects.
|
void |
Converter.convert(S source,
T target,
ExecutorService service)
Perform validation of the supplied validator source, delegating all work to the supplied Executor Service to
enable validation in parallel.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ConversionHandler.convert(D data,
O out)
Converts data from a data item into some resource.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ADFConversionHandler.convert(ADF data,
O out)
Invoke this convert handler.
|
protected abstract void |
ADFConversionHandler.convertData(ADF data,
O out)
Performs the unit of work to convert the data into the given output resource.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ADFNodeConversionHandler.convert(D data,
O out)
Invoke this convert handler.
|
protected abstract void |
ADFNodeConversionHandler.convertData(D data,
O out)
Performs the unit of work to convert the data into the given output resource.
|
| Modifier and Type | Method and Description |
|---|---|
void |
IDFConversionHandler.convert(IDF data,
O out)
Invoke this convert handler.
|
protected abstract void |
IDFConversionHandler.convertData(IDF data,
O out)
Performs the unit of work to convert the data into the given output resource.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SDRFConversionHandler.convert(SDRF data,
O out)
Invoke this convert handler.
|
protected abstract void |
SDRFConversionHandler.convertData(SDRF data,
O out)
Performs the unit of work to convert the data into the given output resource.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SDRFNodeConversionHandler.convert(D data,
O out)
Invoke this convert handler.
|
protected abstract void |
SDRFNodeConversionHandler.convertData(D data,
O out)
Performs the unit of work to convert the data into the given output resource.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ADFParser.write(ADF adf) |
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