| Package | Description |
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.datamodel |
Classes for constructing an in-memory datamodel of the data contained in IDF and
SDRF files, as specified by the MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.layout | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node |
Classes that model nodes in the SDRF graph datastructure, as described by the
MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf |
SDRF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node |
Specific handlers for SDRF node data items, as defined in the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute |
SDRF Handler implementations that are capable of handling data items that
represent attributes attached to a node, as defined by the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.visitor |
Visitor classes that can be used to visit and inspect MAGE-TAB handlers.
|
| uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor | |
| uk.ac.ebi.arrayexpress2.magetab.utils |
Some common utility classes for parsing, validating and interpreting MAGE-TAB
files.
|
| Class and Description |
|---|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| AbstractSDRFNode
An abstract top-level implementation of an SDRFNode.
|
| HybridizationNode
A hybridization node in the graph.
|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| SDRFNode
A node in the SDRF data structure.
|
| Class and Description |
|---|
| ArrayDataMatrixNode
An array data matrix node in the graph.
|
| ArrayDataNode
An array data node in the graph.
|
| ArrayDesignNode
Deprecated.
since version 1.1
|
| AssayNode
An Assay Node, in the SDRF graph.
|
| DerivedArrayDataMatrixNode
A derived array data matrix node in the graph.
|
| DerivedArrayDataNode
A derived array data node in the graph.
|
| ExtractNode
An extract node in the graph.
|
| HybridizationNode
A hybridization node in the graph.
|
| ImageNode
An image node in the graph.
|
| LabeledExtractNode
A labeled extract node in the graph.
|
| NormalizationNode
A normalization node in the graph.
|
| ProtocolApplicationNode
A protocol "node" in the graph.
|
| SampleNode
A sample node in the graph.
|
| ScanNode
A scan node in the graph.
|
| SDRFNode
A node in the SDRF data structure.
|
| SourceNode
A source node in the graph.
|
| Class and Description |
|---|
| HybridizationNode
A hybridization node in the graph.
|
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