| Package | Description |
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.converter | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel |
Classes for constructing an in-memory datamodel of the data contained in IDF and
SDRF files, as specified by the MAGE-TAB specification.
|
| uk.ac.ebi.arrayexpress2.magetab.datamodel.layout | |
| uk.ac.ebi.arrayexpress2.magetab.datamodel.layout.calc | |
| uk.ac.ebi.arrayexpress2.magetab.handler |
Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf |
ADF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl |
Specific, concrete ADF header handler implementations.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.node |
ADF "graph part" specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.idf |
IDF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl |
Specific, concrete IDF handler implementations.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf |
SDRF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node |
Specific handlers for SDRF node data items, as defined in the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf.node.attribute |
SDRF Handler implementations that are capable of handling data items that
represent attributes attached to a node, as defined by the MAGE-TAB
specification.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.visitor |
Visitor classes that can be used to visit and inspect MAGE-TAB handlers.
|
| uk.ac.ebi.arrayexpress2.magetab.parser |
Parser classes for parsing MAGE-TAB aspects.
|
| uk.ac.ebi.arrayexpress2.magetab.renderer | |
| uk.ac.ebi.arrayexpress2.magetab.renderer.adaptor | |
| uk.ac.ebi.arrayexpress2.magetab.utils |
Some common utility classes for parsing, validating and interpreting MAGE-TAB
files.
|
| uk.ac.ebi.arrayexpress2.magetab.validator |
Validator classes for validating the MAGE-TAB datamodel during parsing.
|
| Class and Description |
|---|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| MAGETABInvestigation
An object that models a MAGE-TAB document, with elements for each type of structure within the MAGE-TAB
specification.
|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| IDFField
Annotation class that adds mapping between fields of IDF.class and fields in IDF object
|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| MAGETABInvestigation
An object that models a MAGE-TAB document, with elements for each type of structure within the MAGE-TAB
specification.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| MAGETABInvestigation
An object that models a MAGE-TAB document, with elements for each type of structure within the MAGE-TAB
specification.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| MAGETABArrayDesign
An object that models a MAGE-TAB representation of an array design, with a single ADF element that corresponds to the
MAGE-TAB specification.
|
| MAGETABInvestigation
An object that models a MAGE-TAB document, with elements for each type of structure within the MAGE-TAB
specification.
|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| ADF
A datastructure that models the ADF in the MAGE-TAB spec.
|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
| Class and Description |
|---|
| MAGETABInvestigation
An object that models a MAGE-TAB document, with elements for each type of structure within the MAGE-TAB
specification.
|
| Class and Description |
|---|
| IDF
A datastructure that simply models IDF in the MAGE-TAB spec.
|
| MAGETABInvestigation
An object that models a MAGE-TAB document, with elements for each type of structure within the MAGE-TAB
specification.
|
| SDRF
A datastructure that simply models SDRF in the MAGE-TAB spec.
|
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