Uses of Class
uk.ac.ebi.arrayexpress2.magetab.handler.idf.IDFReadHandler

Packages that use IDFReadHandler

Package	Description
uk.ac.ebi.arrayexpress2.magetab.handler	Handler classes, interfaces and utilities for interpreting MAGE-TAB documents and converting to objects in the datamodel and ArrayExpress 2 domain model.
uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl	Specific, concrete IDF handler implementations.

Uses of IDFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler

Methods in uk.ac.ebi.arrayexpress2.magetab.handler that return types with arguments of type IDFReadHandler

Modifier and Type	Method and Description
Collection<IDFReadHandler>	HandlerLoader.getIDFReadHandlers(String header) Lookup IDF reading handlers that can read a particular header.

Uses of IDFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl

Subclasses of IDFReadHandler in uk.ac.ebi.arrayexpress2.magetab.handler.idf.impl

Modifier and Type	Class and Description
class	AccessionHandler A handler that handles rows in the IDF that describe the arrayaexpress accession number in a comment field.
class	CommentHandler A handler that handles all comments in an arrayexpress IDF document, excluding accession comments Tag: Comment[*] Cardinality: unlimited
class	DateOfExperimentHandler A handler implementation that will handle Date of Experiment fields in the IDF.
class	ExperimentalDesignHandler A handler implementation that will handle Experimental Design fields in the IDF.
class	ExperimentalDesignTermAccessionHandler A handler implementation that will handle Experimental Design Term Accession Number fields in the IDF.
class	ExperimentalDesignTermSourceRefHandler A handler implementation that will handle Experimental Design Term Source Ref fields in the IDF.
class	ExperimentalFactorNameHandler A handler implementation that will handle Experimental Factor Name fields in the IDF.
class	ExperimentalFactorTermAccessionHandler A handler implementation that will handle Experimental Factor Term Accession fields in the IDF.
class	ExperimentalFactorTermSourceRefHandler A handler implementation that will handle Experimental Factor Term Source REF fields in the IDF.
class	ExperimentalFactorTypeHandler A handler implementation that will handle Experimental Factor Type fields in the IDF.
class	ExperimentDescriptionHandler A handler implementation that will handle Experiment Description fields in the IDF.
class	InvestigationTitleHandler A handler implementation that will handle Investigation Title fields in the IDF.
class	MAGETABVersionHandler A handler implementation that will handle MAGE-TAB Version fields in the IDF.
class	NormalizationTermAccessionHandler A handler implementation that will handle Normalization Term Accession fields in the IDF.
class	NormalizationTermSourceRefHandler A handler implementation that will handle Normalization Term Source REF fields in the IDF.
class	NormalizationTypeHandler A handler implementation that will handle Normalization Type fields in the IDF.
class	PersonAddressHandler A handler implementation that will handle Person Address fields in the IDF.
class	PersonAffiliationHandler A handler implementation that will handle Person Affiliation fields in the IDF.
class	PersonEmailHandler A handler implementation that will handle Person Email fields in the IDF.
class	PersonFaxHandler A handler implementation that will handle Person Fax fields in the IDF.
class	PersonFirstNameHandler A handler implementation that will handle Person First Name fields in the IDF.
class	PersonLastNameHandler A handler implementation that will handle Person Last Name fields in the IDF.
class	PersonMidInitialsHandler A handler implementation that will handle Person Mid Initial fields in the IDF.
class	PersonPhoneHandler A handler implementation that will handle Person Phone fields in the IDF.
class	PersonRolesHandler A handler implementation that will handle Person Roles fields in the IDF.
class	PersonRolesTermAccessionHandler A handler implementation that will handle Person Roles Term Accession Number fields in the IDF.
class	PersonRolesTermSourceRefHandler A handler implementation that will handle Person Roles Term Source REF fields in the IDF.
class	ProtocolContactHandler A handler implementation that will handle Protocol Contact fields in the IDF.
class	ProtocolDescriptionHandler A handler implementation that will handle Protocol Description fields in the IDF.
class	ProtocolHardwareHandler A handler implementation that will handle Protocol hardware fields in the IDF.
class	ProtocolNameHandler A handler implementation that will handle Protocol Name fields in the IDF.
class	ProtocolParametersHandler A handler implementation that will handle Protocol Name fields in the IDF.
class	ProtocolSoftwareHandler A handler implementation that will handle Protocol Software fields in the IDF.
class	ProtocolTermAccessionHandler A handler implementation that will handle Protocol Term accession fields in the IDF.
class	ProtocolTermSourceRefHandler A handler implementation that will handle Protocol Term Source Ref fields in the IDF.
class	ProtocolTypeHandler A handler implementation that will handle Protocol Type fields in the IDF.
class	PublicationAuthorListHandler A handler implementation that will handle Publication Author List fields in the IDF.
class	PublicationDoiHandler A handler implementation that will handle Publication DOI Handler fields in the IDF.
class	PublicationStatusHandler A handler implementation that will handle Publication Status fields in the IDF.
class	PublicationStatusTermAccessionHandler A handler implementation that will handle Publication Status Term Accession fields in the IDF.
class	PublicationStatusTermSourceRefHandler A handler implementation that will handle Publication Status Term Source Ref fields in the IDF.
class	PublicationTitleHandler A handler implementation that will handle Publication Title fields in the IDF.
class	PublicReleaseDateHandler A handler implementation that will handle Public Release Date Handler fields in the IDF.
class	PubMedIdHandler A handler implementation that will handle PubMed ID fields in the IDF.
class	QualityControlTermAccessionHandler A handler implementation that will handle Quality Control Term Accession fields in the IDF.
class	QualityControlTermSourceRefHandler A handler implementation that will handle Quality Control Term Source Ref fields in the IDF.
class	QualityControlTypeHandler A handler implementation that will handle Quality Control Type fields in the IDF.
class	ReplicateTermAccessionHandler A handler implementation that will handle Replicate Term Accession fields in the IDF.
class	ReplicateTermSourceRefHandler A handler implementation that will handle Replicate Term Source Ref fields in the IDF.
class	ReplicateTypeHandler A handler implementation that will handle Replicate Types in the IDF.
class	SDRFFileHandler A handler that handles the line in the IDF that references the SDRF file location.
class	TermSourceFileHandler A Handler that handles the IDF rows that point to the file from which term source references are taken from.
class	TermSourceNameHandler A handler that handles the term source name declaration rows in IDF.
class	TermSourceVersionHandler A handler that handles the term source version declaration rows in IDF.