| Package | Description | 
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.handler | 
 Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model. 
 | 
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl | 
 Specific, concrete ADF header handler implementations. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Collection<ADFHeaderReadHandler> | 
HandlerLoader.getADFHeaderReadHandlers(String header)
Lookup ADF reading handlers that can read a particular header. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
AccessionHandler
A handler that handles rows in the ADF that describe the arrayaexpress accession number in a comment field. 
 | 
class  | 
ArrayDesignNameHandler
A handler that handlers ADF rows describing the array design name. 
 | 
class  | 
CommentHandler
A handler that handles ADF rows describing comments
 
 Tag: Comment[] 
 | 
class  | 
PrintingProtocolHandler
A handler that handlers ADF rows describing the printing protocol
 
 Tag: Printing Protocol 
 | 
class  | 
ProviderHandler
A handler that handles ADF rows describing the provider
 
 Tag: Provider 
 | 
class  | 
SequencePolymerTypeHandler
A handler that handles ADF rows describing the sequence polymer type
 
 Tag: Sequence Polymer Type 
 | 
class  | 
SequencePolymerTypeTermAccessionHandler
A handler that handles ADF rows describing the sequence polymer type term accession
 
 Tag: Sequence Polymer Type Term Accession Number 
 | 
class  | 
SequencePolymerTypeTermSourceRefHandler
A handler that handles ADF rows describing the sequence polymer type term source reference
 
 Tag: Sequence Polymer Type Term Source REF 
 | 
class  | 
SubstrateTypeHandler
A handler that handles ADF rows describing the substrate type
 
 Tag: Substrate Type 
 | 
class  | 
SubstrateTypeTermAccessionHandler
A handler that handles ADF rows describing the substrate type term accession
 
 Tag: Substrate Type Term Accession Number 
 | 
class  | 
SubstrateTypeTermSourceRefHandler
A handler that handles ADF rows describing the substrate type term source reference
 
 Tag: Substrate Type Term Source REF 
 | 
class  | 
SurfaceTypeHandler
A handler that handles ADF rows describing the surface type
 
 Tag: Surface Type 
 | 
class  | 
SurfaceTypeTermAccessionHandler
A handler that handles ADF rows describing the surface type term accession
 
 Tag: Surface Type Term Accession Number 
 | 
class  | 
SurfaceTypeTermSourceRefHandler
A handler that handles ADF rows describing the surface type term source reference
 
 Tag: Surface Type Term Source REF 
 | 
class  | 
TechnologyTypeHandler
A handler that handles ADF rows describing the technology type
 
 Tag: Technology Type 
 | 
class  | 
TechnologyTypeTermAccessionHandler
A handler that handles ADF rows describing the technology type term accession
 
 Tag: Technology Type Term Accession Number 
 | 
class  | 
TechnologyTypeTermSourceRefHandler
A handler that handles ADF rows describing the technology type term source reference
 
 Tag: Technology Type Term Source REF 
 | 
class  | 
TermSourceFileHandler
A Handler that handles the ADF rows that point to the file from which term source references are taken from. 
 | 
class  | 
TermSourceNameHandler
A handler that handles the term source name declaration rows in ADF. 
 | 
class  | 
TermSourceVersionHandler
A handler that handles the term source version declaration rows in ADF. 
 | 
class  | 
VersionHandler
A handler that handles the version rows of this ADF. 
 | 
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