| Package | Description |
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.handler |
Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf.impl |
Specific, concrete ADF header handler implementations.
|
| Modifier and Type | Method and Description |
|---|---|
Collection<ADFHeaderReadHandler> |
HandlerLoader.getADFHeaderReadHandlers(String header)
Lookup ADF reading handlers that can read a particular header.
|
| Modifier and Type | Class and Description |
|---|---|
class |
AccessionHandler
A handler that handles rows in the ADF that describe the arrayaexpress accession number in a comment field.
|
class |
ArrayDesignNameHandler
A handler that handlers ADF rows describing the array design name.
|
class |
CommentHandler
A handler that handles ADF rows describing comments
Tag: Comment[]
|
class |
PrintingProtocolHandler
A handler that handlers ADF rows describing the printing protocol
Tag: Printing Protocol
|
class |
ProviderHandler
A handler that handles ADF rows describing the provider
Tag: Provider
|
class |
SequencePolymerTypeHandler
A handler that handles ADF rows describing the sequence polymer type
Tag: Sequence Polymer Type
|
class |
SequencePolymerTypeTermAccessionHandler
A handler that handles ADF rows describing the sequence polymer type term accession
Tag: Sequence Polymer Type Term Accession Number
|
class |
SequencePolymerTypeTermSourceRefHandler
A handler that handles ADF rows describing the sequence polymer type term source reference
Tag: Sequence Polymer Type Term Source REF
|
class |
SubstrateTypeHandler
A handler that handles ADF rows describing the substrate type
Tag: Substrate Type
|
class |
SubstrateTypeTermAccessionHandler
A handler that handles ADF rows describing the substrate type term accession
Tag: Substrate Type Term Accession Number
|
class |
SubstrateTypeTermSourceRefHandler
A handler that handles ADF rows describing the substrate type term source reference
Tag: Substrate Type Term Source REF
|
class |
SurfaceTypeHandler
A handler that handles ADF rows describing the surface type
Tag: Surface Type
|
class |
SurfaceTypeTermAccessionHandler
A handler that handles ADF rows describing the surface type term accession
Tag: Surface Type Term Accession Number
|
class |
SurfaceTypeTermSourceRefHandler
A handler that handles ADF rows describing the surface type term source reference
Tag: Surface Type Term Source REF
|
class |
TechnologyTypeHandler
A handler that handles ADF rows describing the technology type
Tag: Technology Type
|
class |
TechnologyTypeTermAccessionHandler
A handler that handles ADF rows describing the technology type term accession
Tag: Technology Type Term Accession Number
|
class |
TechnologyTypeTermSourceRefHandler
A handler that handles ADF rows describing the technology type term source reference
Tag: Technology Type Term Source REF
|
class |
TermSourceFileHandler
A Handler that handles the ADF rows that point to the file from which term source references are taken from.
|
class |
TermSourceNameHandler
A handler that handles the term source name declaration rows in ADF.
|
class |
TermSourceVersionHandler
A handler that handles the term source version declaration rows in ADF.
|
class |
VersionHandler
A handler that handles the version rows of this ADF.
|
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