| Package | Description | 
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.handler | 
 Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model. 
 | 
| uk.ac.ebi.arrayexpress2.magetab.handler.adf | 
 ADF specific handler classes. 
 | 
| uk.ac.ebi.arrayexpress2.magetab.handler.idf | 
 IDF specific handler classes. 
 | 
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf | 
 SDRF specific handler classes. 
 | 
| uk.ac.ebi.arrayexpress2.magetab.parser | 
 Parser classes for parsing MAGE-TAB aspects. 
 | 
| uk.ac.ebi.arrayexpress2.magetab.validator | 
 Validator classes for validating the MAGE-TAB datamodel during parsing. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
ValidateHandler.validate(D data)
Causes this handler to validate some data that has been read into a  
MAGETABInvestigation. | 
void | 
MAGETABValidateHandler.validate(MAGETABInvestigation data)
Invoke this validate handler. 
 | 
protected abstract void | 
MAGETABValidateHandler.validateData(MAGETABInvestigation data)
Performs the unit of work to validate the data. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
ADFValidateHandler.validate(ADF data)
Invoke this validate handler. 
 | 
protected abstract void | 
ADFValidateHandler.validateData(ADF data)
Performs the unit of work to validate the data. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
IDFValidateHandler.validate(IDF data)
Invoke this validate handler. 
 | 
protected abstract void | 
IDFValidateHandler.validateData(IDF data)
Performs the unit of work to validate the data. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
SDRFValidateHandler.validate(SDRF data)
Invoke this validate handler. 
 | 
protected abstract void | 
SDRFValidateHandler.validateData(SDRF data)
Performs the unit of work to validate the data. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
ADFParser.validate(ADF adf)  | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
IDFValidator.validate(IDF idf)  | 
void | 
MAGETABValidator.validate(MAGETABInvestigation investigation)  | 
void | 
MAGETABValidator.validate(MAGETABInvestigation investigation,
        ExecutorService service)  | 
void | 
SDRFValidator.validate(SDRF sdrf)  | 
void | 
Validator.validate(T validatorSource)
Perform validation of the supplied validator source. 
 | 
void | 
AbstractValidator.validate(T validatorSource,
        ExecutorService service)
This default implementation ignored the supplied service and executes tasks in a linear manner,  This is retained
 to preserve backwards compatibility with the 1.0 release. 
 | 
void | 
Validator.validate(T validatorSource,
        ExecutorService service)
Perform validation of the supplied validator source, delegating all work to the supplied Executor Service to
 enable validation in parallel. 
 | 
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