| Package | Description |
|---|---|
| uk.ac.ebi.arrayexpress2.magetab.handler |
Handler classes, interfaces and utilities for interpreting MAGE-TAB documents
and converting to objects in the datamodel and ArrayExpress 2 domain model.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.adf |
ADF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.idf |
IDF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.handler.sdrf |
SDRF specific handler classes.
|
| uk.ac.ebi.arrayexpress2.magetab.parser |
Parser classes for parsing MAGE-TAB aspects.
|
| uk.ac.ebi.arrayexpress2.magetab.validator |
Validator classes for validating the MAGE-TAB datamodel during parsing.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ValidateHandler.validate(D data)
Causes this handler to validate some data that has been read into a
MAGETABInvestigation. |
void |
MAGETABValidateHandler.validate(MAGETABInvestigation data)
Invoke this validate handler.
|
protected abstract void |
MAGETABValidateHandler.validateData(MAGETABInvestigation data)
Performs the unit of work to validate the data.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ADFValidateHandler.validate(ADF data)
Invoke this validate handler.
|
protected abstract void |
ADFValidateHandler.validateData(ADF data)
Performs the unit of work to validate the data.
|
| Modifier and Type | Method and Description |
|---|---|
void |
IDFValidateHandler.validate(IDF data)
Invoke this validate handler.
|
protected abstract void |
IDFValidateHandler.validateData(IDF data)
Performs the unit of work to validate the data.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SDRFValidateHandler.validate(SDRF data)
Invoke this validate handler.
|
protected abstract void |
SDRFValidateHandler.validateData(SDRF data)
Performs the unit of work to validate the data.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ADFParser.validate(ADF adf) |
| Modifier and Type | Method and Description |
|---|---|
void |
IDFValidator.validate(IDF idf) |
void |
MAGETABValidator.validate(MAGETABInvestigation investigation) |
void |
MAGETABValidator.validate(MAGETABInvestigation investigation,
ExecutorService service) |
void |
SDRFValidator.validate(SDRF sdrf) |
void |
Validator.validate(T validatorSource)
Perform validation of the supplied validator source.
|
void |
AbstractValidator.validate(T validatorSource,
ExecutorService service)
This default implementation ignored the supplied service and executes tasks in a linear manner, This is retained
to preserve backwards compatibility with the 1.0 release.
|
void |
Validator.validate(T validatorSource,
ExecutorService service)
Perform validation of the supplied validator source, delegating all work to the supplied Executor Service to
enable validation in parallel.
|
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