uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.compensateForEscapedNewlines(String, String) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.endsWithEscapedNewline(String) |
uk.ac.ebi.arrayexpress2.magetab.handler.visitor.LocationTracker.getIDFLocations(String)
since version 1.1, use IDF.getLayout().getLineNumberForHeader() instead
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.MAGETABInvestigation.getLocationTracker()
since version 1.1, use Layout
implementations instead
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.SDRFAttribute.getNodeName()
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ADFAttribute.getNodeName()
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.attribute.SDRFAttribute.getNodeType()
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.adf.node.attribute.ADFAttribute.getNodeType()
|
uk.ac.ebi.arrayexpress2.magetab.handler.visitor.LocationTracker.getSDRFLocations(SDRFNode)
since version 1.1, use SDRF.getLayout().getLocationsForNode() instead
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ArrayDesignNode.headers() |
uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF.lookupNode(String, Class)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF.lookupNode(String, Class)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF.lookupNode(String, String)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF.lookupNode(String, String)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF.lookupNodes(Class)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF.lookupNodes(Class)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF.lookupNodes(String)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF.lookupNodes(String)
|
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.readMergedTabDelimitedInputStream(InputStream, String, boolean, boolean, String...) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.readMergedTabDelimitedInputStream(InputStream, String, boolean, String...) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.readTabDelimitedInputStream(InputStream, String, boolean) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.readTabDelimitedInputStream(InputStream, String, boolean, boolean) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.removeEscaping(String) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.removeEscaping(String[]) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.removeEscaping(String[], boolean) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.removeEscaping(String, boolean) |
uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF.removeNodeFromGraph(ADFNode)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF.removeNodeFromGraph(SDRFNode)
|
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.removeTrailingEmptyCells(String[]) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.removeWhitespace(String[]) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.splitLine(String) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.splitLine(String, boolean) |
uk.ac.ebi.arrayexpress2.magetab.utils.MAGETABUtils.splitLine(String, boolean, boolean) |
uk.ac.ebi.arrayexpress2.magetab.datamodel.ADF.storeNode(ADFNode)
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.SDRF.storeNode(SDRFNode)
|
uk.ac.ebi.arrayexpress2.magetab.handler.visitor.LocationTracker.trackLocation(Handler, Point)
since version 1.1
|
uk.ac.ebi.arrayexpress2.magetab.datamodel.sdrf.node.ArrayDesignNode.values() |